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As long as the chick is doing well, I wouldn't worry about it. But since I once had one with a leaking air sac make that click sound, I would feel of the chick's body around the neck, chest, and back for any puffiness that could be air underneath the skin. That condition is called subcutaneous emphysema. There can be clicking without that condition. Here is some info about it: 

http://www.ijasvm.com/ijasvmadmin/upload/IJASVM_5113cbc51d31b.pdf


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