I'm glad you were able to get confirmation so you are sure what's going on.We just received the necropsy results back on Thelma and they were consistent with Marek's disease despite the fact that she was vaccinated. Our whole flock is vaccinated as well. I guess now I get the lovely distinction of being a Marek's flock despite the fact that we did everything we could to prevent it by vaccinating and keeping a closed flock. I'm worried about all the chicks we have that have been in contact with her. We removed her as soon as she showed any symptoms but I think it would be too late at that point. I'm also worried about moving the younger ones outside with our adults now too since I don't want to expose them to anything. I'm assuming that is a futile worry at this point though since they are likely exposed as well. It wasn't a surprising result based on the way her symptoms but progressed but still upsetting and somewhat shocking since everyone is vaccinated.
Unfortunately the vaccine does not prevent infection from the virus, it can help prevent the formation of tumors (Cutaneous Form Marek's), but Marek's presents in different ways, there's many strains and of course it's in four forms - Cutaneous, Ocular, Visceral and Neural.
Many folks do have positive Marek's flocks and over time have learned to find a balance in managing the disease. So not all hope is lost.
I'll tag in @microchick to give you some pointers and encouragement.