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When it rains it pours eh?
Ever so sorry for your losses. Is that vet still an option? If this is respiratory then they'll likely need antibiotics. It's been my experience that chicks that recover from respiratory disease WITHOUT the help of antibiotics tend to have more reproductive problems later in life. Pus in chickens is thick and pasty, not runny like human pus, and basically has nowhere to go once a chicken has healed... I'm sure some vet or doctor could say all of the following in foot-long words, but the way I wrap my head around it is that it seems like the pus-blob remains inside the bird, collecting more bacteria and causing secondary infections, and as the blob grows with more of this solidified pus, it start overcrowding the abdominal cavity, leaving nowhere for vital organs the room to do their work. Again, I'm sorry that you're going through this stressful and sorrowful time. You're still in my prayers.
Sorry for your loss. Have you seen any older chickens before in your flock that have had any respiratory diseases that have included sneezing or watery eyes? Infectious bronchitis virus, which is not treatable with any antibiotics, can cause reproductive problems later in life. Of course there are quites a few respiratorys diseases including IB, MG, ILT, and coryza, plus others. Mold in a brooder or coop can cause a fungal respiratory disease called aspergillosis. Here is a good link about those and other common diseases:
https://edis.ifas.ufl.edu/ps044